Software
Global Alignment for Sequence Taxonomy
Available GAST-formatted SSU reference sets.
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Single-Linkage Preclustering for improved OTU clustering
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Anchor Trimming: |
The latest version of Anchor Trimming software can be obtained from https://github.com/meren/454-anchor-trimming. |
Other Useful Software |
ARB:
ESPRIT:
fasta2pfam.pl: Converts a fasta file to pfam format for use with quickdist (uses bioperl libraries, and so can only be used if you have bioperl installed). .
MOTHUR:
MUSCLE:
quickdist: Calculates a matrix of pairwise distances between sequences in a multiple sequence alignment. .
RDP Classifier:
Vsearch:
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