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SeaBase VAMPS Portal

Microbiome Resources for Marine and Aquatic Species

Explore Available VAMPS Datasets

SeaBase provides tools for access, searching, and visualization of the genomes and microbiomes of marine and aquatic organisms. Resources include genome browsing (JBrowse); BLAST searches of genomes, transcriptomes, or proteomes (SequenceServer) with visualization of results on genomes; and user-directed visualization and analysis of microbiomes using the MBL’s VAMPS webserver.

OrganismProject NameDatasetsProject Title
Ciona intestinalis C_intestinalis_Bv3v4 65 Comparative microbiome and metabolome analyses of the marine tunicate Ciona intestinalis from native and invaded habitats
Crassostrea gigas C_gigas_Bv1v2 176 Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection
Nematostella vectensis N_vectensis_Bv1v2 131 Microbiota mediated plasticity promotes thermal adaptation in the sea anemone Nematostella vectensis